Bay-Delta SCHISM Project
Installation And Getting Started
Overview
SCHISM Code or Binaries
Downloading
Compile Settings
Git
Bay-Delta Package
Required Python Packages
Configuration System
Overview
Configuration File Locations and Priorities
Usage
Example Configuration File
Bathymetry
Complete Sample Inputs
VisIt SCHISM Plug-in
Links to tools
Learning Resources for Bay-Delta SCHISM
General Resources and Tools
Bay-Delta SCHSIM Tutorials
Linux Hints for SCHISM
Using Linux from Windows
Copying a Run Safely
Symbolic links
Archives and Tarballs
Essential commands in a SCHISM context
Manuals
Getting Help
VIMS and Other External Resources
Bay-Delta SCHISM User Guide
Bay-Delta SCHISM Setup
Running a Preprepared Setup
Bay-Delta SCHISM Essentials
Overview
Overview of a Bay-Delta SCHISM Run
Vignette: Hindcast Bay Delta SCHISM at Delta Modeling Section with Preprocessor
Required Files, Directory Structure and Recommended Study Practices
Grid, Spatial Data and Preprocessor
Boundaries & Input Files
Prepare Ocean Boundary (elev2D.th.nc)
Inflow/Outflow Boundaries
Atmospheric setup
Ocean Boundary Stabilization: Barotropic Warmup
Key Run Parameters and Gotchas
Run Initialization and Restart (Hotstart)
Nudging Files
Vegetation
Inspection of Model Setup
Checklists
Test Suite for Prechecking Runs
Output Files
Output
Advanced Tasks and Concepts
Common Problems and Diagnosis
Where does SCHISM write error messages?
My run says “segfault”
The runs seems very slow compared to normal
Dry boundary
Simulating water age
Compile with age
Parameters in param.nml
Additional *.ic files
Hotstart considerations
Typical output processing
Sea Level Rise
Sources, Sinks, Delta Channel Depletions
Identifying source locations and names in preprocessor
Delta and Suisun channel depletions
Making sure you includ the th files for sources/sinks
Tracer concentrations
Hydraulic Structures
Where is the documentation?
Setting up the mesh to make structures easy
Preventing dry boundary messages
Important Bay-Delta examples
Gridding the Horizontal Mesh
Meshing
Vertical mesh setup
Checklist for after you change the mesh
Utilities and Scripts
GIS Conversion
Hotstart Inventory: Convert iteration numbers to dates
model_time and multi_clip
Contributing to the Documentation
Introduction
Getting Started
Windows
Linux
How it works
Local html pages
GitHub Pages
Further Documentation Concepts
Sphinx Documentation Principles
Headings order
BayDeltaSCHISM Specifics
Mermaid Chart Principles
BayDeltaSCHISM Standards
VS Code plugin
Cool stuff
Click Documentation Principles
Sphinx examples
Math
Figures
Diagrams
Embedding Videos
Calibration Report and References
Calibration
Training
Support
References
Bay-Delta SCHISM
Click Documentation Principles