Index

Symbols

--coords clip_dems command line option sch-clip-dems-cli command line option --crs convert_mesh command line option, [1] sch-convert-mesh-cli command line option --dumpfile contour_smooth-save command line option sch-contour-smooth-cli-save command line option --help clip_dems command line option contour_smooth command line option contour_smooth-save command line option contour_smooth-smooth command line option contour_smooth-view command line option convert_mesh command line option, [1] convert_polygons command line option, [1] sch command line option sch-batch-metrics-cli command line option sch-clip-dems-cli command line option sch-contour-smooth-cli command line option sch-contour-smooth-cli-save command line option sch-contour-smooth-cli-smooth command line option sch-contour-smooth-cli-view command line option sch-convert-linestrings-cli command line option sch-convert-mesh-cli command line option sch-convert-points-cli command line option, [1] sch-convert-polygons-cli command line option, [1] --hshift clip_dems command line option sch-clip-dems-cli command line option --image clip_dems command line option sch-clip-dems-cli command line option --input contour_smooth-smooth command line option convert_mesh command line option, [1] convert_polygons command line option sch-contour-smooth-cli-smooth command line option sch-convert-linestrings-cli command line option sch-convert-mesh-cli command line option sch-convert-points-cli command line option sch-convert-polygons-cli command line option --levels contour_smooth-view command line option sch-contour-smooth-cli-view command line option --max_time contour_smooth-smooth command line option sch-contour-smooth-cli-smooth command line option --nstep contour_smooth-smooth command line option sch-contour-smooth-cli-smooth command line option

--original contour_smooth-save command line option sch-contour-smooth-cli-save command line option --outfile contour_smooth-save command line option sch-contour-smooth-cli-save command line option --outformat clip_dems command line option sch-clip-dems-cli command line option --output convert_mesh command line option, [1] convert_polygons command line option sch-convert-linestrings-cli command line option sch-convert-mesh-cli command line option sch-convert-points-cli command line option sch-convert-polygons-cli command line option --prefix clip_dems command line option sch-clip-dems-cli command line option --report_interval contour_smooth-smooth command line option sch-contour-smooth-cli-smooth command line option --scales contour_smooth-smooth command line option sch-contour-smooth-cli-smooth command line option --verbose clip_dems command line option sch-clip-dems-cli command line option --vmax contour_smooth-view command line option sch-contour-smooth-cli-view command line option --vmin contour_smooth-view command line option sch-contour-smooth-cli-view command line option -h clip_dems command line option contour_smooth command line option contour_smooth-save command line option contour_smooth-smooth command line option contour_smooth-view command line option convert_mesh command line option, [1] convert_polygons command line option, [1] sch command line option sch-batch-metrics-cli command line option sch-clip-dems-cli command line option sch-contour-smooth-cli command line option sch-contour-smooth-cli-save command line option sch-contour-smooth-cli-smooth command line option sch-contour-smooth-cli-view command line option sch-convert-linestrings-cli command line option sch-convert-mesh-cli command line option sch-convert-points-cli command line option, [1] sch-convert-polygons-cli command line option, [1]

A

add_boundary() (schimpy.schism_mesh.SchismMesh method) (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) add_structure() (schimpy.schism_input.SchismInput method) addnode() (in module schimpy.sms2gr3) adjust_dt() (schimpy.param.Params method) adopt_new_mesh() (schimpy.schism_setup.SchismSetup method) air_pressure (schimpy.params.HydroOutput attribute) air_temperature (schimpy.params.HydroOutput attribute) allocate() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) alphaw (schimpy.params.Opt attribute) appears_done() (in module schimpy.combine_consume)

apply_linestring_ops() (schimpy.schism_setup.SchismSetup method) apply_polygons() (schimpy.schism_setup.SchismSetup method) archive_blocks() (in module schimpy.combine_consume) areas() (schimpy.schism_mesh.SchismMesh method) ArgumentParserYaml (class in schimpy.schism_yaml) assemble_element_matrix() (schimpy.grid_opt.GridOptimizer method) assemble_face_matrix() (schimpy.grid_opt.GridOptimizer method) attribute (schimpy.schism_polygon.SchismPolygon property) autoscale() (schimpy.three_point_linear_norm.ThreePointLinearNorm method) autoscale_None() (schimpy.three_point_linear_norm.ThreePointLinearNorm method) average() (schimpy.gaussian_quadrature.GaussianQuadrature method) (schimpy.gaussian_quadrature.GaussianQuadratureLine2 method) AWSGrib2Inventory (class in schimpy.hrr3)

B

barotropic_pres_grad_xy (schimpy.params.HydroOutput attribute) BaseIO (class in schimpy.base_io) bilinear() (in module schimpy.stacked_dem_fill) BilinearMeshDensity (class in schimpy.lsc2) BinaryTHWriter (class in schimpy.gen_elev2d) bottom_excursion_period (schimpy.params.WindWaveOutput attribute) bottom_stress_xy (schimpy.params.HydroOutput attribute) bottom_wave_period (schimpy.params.WindWaveOutput attribute) bound_linear() (in module schimpy.bound_linear) boundaries (schimpy.schism_mesh.SchismMesh property) Boundary (class in schimpy.sms2gr3) BoundaryType (in module schimpy.schism_mesh) (in module schimpy.triquadmesh)

BoundaryTypes (in module schimpy.trimesh) bounding_coords() (in module schimpy.clip_dems) btrack_nudge (schimpy.params.Opt attribute) bucket (schimpy.hrr3.AWSGrib2Inventory property) build_boundary_equations() (schimpy.grid_opt.GridOptimizer method) build_edgecenters() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) build_edges_from_elems() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) build_elem_balls() (schimpy.triquadmesh.TriQuadMesh method) build_global_matrix_and_vector() (schimpy.grid_opt.GridOptimizer method) build_iof_dict() (in module schimpy.params) build_z() (schimpy.schism_mesh.SchismMesh method)

C

calc_f() (in module schimpy.contour_smooth) calculate_depth_at_element_quad_points() (schimpy.grid_opt.GridOptimizer method) calculate_depth_at_face_quad_points() (schimpy.grid_opt.GridOptimizer method) calculate_edge_lengths() (schimpy.grid_opt.GridOptimizer method) calculate_element_areas() (schimpy.grid_opt.GridOptimizer method) calculate_element_volumes_w_dem() (schimpy.grid_opt.GridOptimizer method) calculate_face_areas_w_dem() (schimpy.grid_opt.GridOptimizer method) calculate_max_elevation_in_balls() (schimpy.grid_opt.GridOptimizer method) calculate_quadrature_points_and_weights() (schimpy.gaussian_quadrature.GaussianQuadrature method) (schimpy.gaussian_quadrature.GaussianQuadratureLine2 method) (schimpy.gaussian_quadrature.GaussianQuadratureQuad4 method) (schimpy.gaussian_quadrature.GaussianQuadratureTri3 method) calculate_reference_surface() (schimpy.grid_opt.GridOptimizer method) calculate_reference_surface_at_face_quadarture_points() (schimpy.grid_opt.GridOptimizer method) calculate_reference_surface_maximum() (schimpy.grid_opt.GridOptimizer method) calculate_skewness() (in module schimpy.check_mesh_skewness) calculate_total_number_of_quadrature_points() (schimpy.grid_opt.GridOptimizer method) calculate_values_at_element_quadarture_points() (schimpy.grid_opt.GridOptimizer method) calculate_values_at_face_quadarture_points() (schimpy.grid_opt.GridOptimizer method) cdec_header() (in module schimpy.write_ts) cencoos_schism_opendap() (in module schimpy.cencoos_download) centroids() (schimpy.schism_mesh.SchismMesh method) charnock_coeff (schimpy.params.WindWaveOutput attribute) check_and_suggest() (in module schimpy.schism_setup) check_similarity() (in module schimpy.schism_setup) clear_boundaries() (schimpy.schism_mesh.SchismMesh method) clear_structures() (schimpy.schism_input.SchismInput method) clip() (in module schimpy.model_time) clip_dem() (in module schimpy.clip_dems) clip_dems command line option --coords --help --hshift --image --outformat --prefix --verbose -h DEMLIST close_hotstart_cache() (schimpy.schism_hotstart.hotstart method) coerce_to_type() (in module schimpy.params) collect_edges() (schimpy.grid_opt.GridOptimizer method) collect_element_quadrature_points_for_dem() (schimpy.grid_opt.GridOptimizer method) collect_face_quadrature_points_for_dem() (schimpy.grid_opt.GridOptimizer method) combine() (in module schimpy.combine_consume) combine_consume() (in module schimpy.combine_consume) combine_flux() (in module schimpy.combine_flux) combine_hotstart() (in module schimpy.combine_consume) compare() (schimpy.triquadmesh.TriQuadMesh method) concat_msource_csv() (in module schimpy.schism_sources_sinks) concat_source_sink_yaml() (in module schimpy.schism_sources_sinks) concat_vsource_sink_csv() (in module schimpy.schism_sources_sinks) concatenate_nudge() (schimpy.nudging.Nudging method) construct_weights() (schimpy.nudging.Nudging method) contains() (schimpy.schism_polygon.SchismPolygon method) continuous_peak_period (schimpy.params.WindWaveOutput attribute) contour_smooth command line option --help -h contour_smooth() (in module schimpy.contour_smooth) contour_smooth-save command line option --dumpfile --help --original --outfile -h contour_smooth-smooth command line option --help --input --max_time --nstep --report_interval --scales -h contour_smooth-view command line option --help --levels --vmax --vmin -h FILE0 FILE1

contour_smooth2d() (in module schimpy.contour_smooth) convert_2dm() (in module schimpy.sms2gr3) convert_db_station_in() (in module schimpy.station) convert_linestrings_main() (in module schimpy.convert_linestrings) convert_mesh command line option --crs, [1] --help, [1] --input, [1] --output, [1] -h, [1] convert_mesh() (in module schimpy.convert_mesh) convert_polygons command line option --help, [1] --input --output -h, [1] convert_stations() (in module schimpy.station) coord (schimpy.schism_source.SchismSource property) coords (schimpy.schism_structure.SchismStructure property) copy() (schimpy.param.Params method) Core (class in schimpy.params) core (schimpy.params.Params attribute) coricoef (schimpy.params.Opt attribute) count_boundary_equations() (schimpy.grid_opt.GridOptimizer method) courant_weno (schimpy.params.Opt attribute) creart_sources_from_user_input() (schimpy.schism_setup.SchismSetup method) create_arg_parse() (in module schimpy.convert_sav_class_to_number) create_arg_parser() (in module schimpy.check_mesh_skewness) (in module schimpy.combine_consume) (in module schimpy.combine_flux) (in module schimpy.create_mesh_n_levels) (in module schimpy.create_vgrid_lsc2) (in module schimpy.cruise) (in module schimpy.download_hrrr) (in module schimpy.embed_raster) (in module schimpy.gen_elev2d) (in module schimpy.grid_opt) (in module schimpy.hotstart_inventory) (in module schimpy.interpolate_structure) (in module schimpy.material_poly) (in module schimpy.merge_th) (in module schimpy.model_time) (in module schimpy.nudging) (in module schimpy.schism_hotstart) (in module schimpy.separate_species) (in module schimpy.simulation_timing) (in module schimpy.small_areas) (in module schimpy.sms2gr3) (in module schimpy.stacked_dem_fill) (in module schimpy.station) (in module schimpy.subset_schism_output) create_dataarray() (schimpy.schism_hotstart.VariableField method) create_flux_regions() (schimpy.schism_setup.SchismSetup method) create_hotstart() (schimpy.schism_hotstart.hotstart method) create_node_partitioning() (schimpy.schism_setup.SchismSetup method) create_nudging() (schimpy.nudging.Nudging method) create_open_boundaries() (schimpy.schism_setup.SchismSetup method) create_params() (in module schimpy.params) create_partition() (in module schimpy.subset_schism_output) create_poly() (in module schimpy.material_poly) create_prop_partitioning() (schimpy.schism_setup.SchismSetup method) create_region_nudging() (schimpy.nudging.Nudging method) create_schism_setup() (in module schimpy.schism_setup) create_source_sink_in() (schimpy.schism_setup.SchismSetup method) create_structures() (schimpy.schism_setup.SchismSetup method) cruise_xyt() (in module schimpy.cruise) csv2yaml() (in module schimpy.schism_sources_sinks) CubicLSC2MeshFunction (class in schimpy.lsc2) cur_wwm (schimpy.params.Opt attribute) cut_mesh() (in module schimpy.cut_mesh)

D

deepcopy() (schimpy.trimesh.TriMesh method) default_num_layers() (in module schimpy.lsc2) default_num_layers0() (in module schimpy.lsc2) define_new_grid() (schimpy.schism_hotstart.VariableField method) DEMLIST clip_dems command line option sch-clip-dems-cli command line option density() (schimpy.lsc2.BilinearMeshDensity method) (schimpy.lsc2.CubicLSC2MeshFunction method) depth() (schimpy.lsc2.BilinearMeshDensity method) (schimpy.lsc2.CubicLSC2MeshFunction method) depth_avg_vel_xy (schimpy.params.HydroOutput attribute) describe_elapsed() (in module schimpy.model_time) describe_timestamps() (in module schimpy.model_time) describe_tracers() (in module schimpy.schism_hotstart) detect_min_max_index() (in module schimpy.combine_consume) df_to_shp() (in module schimpy.convert_points) dfh0 (schimpy.params.Opt attribute) dfv0 (schimpy.params.Opt attribute) diff() (schimpy.param.Params method) diffusivity (schimpy.params.HydroOutput attribute) discrete_peak_direction (schimpy.params.WindWaveOutput attribute) diss_rate_bott_friction (schimpy.params.WindWaveOutput attribute)

diss_rate_dep_breaking (schimpy.params.WindWaveOutput attribute) diss_rate_vegetation (schimpy.params.WindWaveOutput attribute) diss_rate_whitecapping (schimpy.params.WindWaveOutput attribute) do_combine() (in module schimpy.combine_consume) do_combine_hotstart() (in module schimpy.combine_consume) do_depth_plot() (in module schimpy.cruise) domain_size() (schimpy.gaussian_quadrature.GaussianQuadrature method) (schimpy.gaussian_quadrature.GaussianQuadratureLine2 method) (schimpy.gaussian_quadrature.GaussianQuadratureQuad4 method) (schimpy.gaussian_quadrature.GaussianQuadratureTri3 method) dominant_direction (schimpy.params.WindWaveOutput attribute) download_hrr() (in module schimpy.download_hrrr) downward_longwave (schimpy.params.HydroOutput attribute) dramp (schimpy.params.Opt attribute) dramp_ss (schimpy.params.Opt attribute) drampbc (schimpy.params.Opt attribute) drampwafo (schimpy.params.Opt attribute) drampwind (schimpy.params.Opt attribute) dry_flag_node (schimpy.params.HydroOutput attribute) dt (schimpy.params.Core attribute) dtb_max (schimpy.params.Opt attribute) dtb_min (schimpy.params.Opt attribute) dump() (in module schimpy.schism_yaml) dzb_min (schimpy.params.Opt attribute)

E

eco_class (schimpy.params.Core attribute) edge_len() (schimpy.schism_mesh.SchismMesh method) edges (schimpy.trimesh.TriMesh property) (schimpy.triquadmesh.TriQuadMesh property) EdgeType (in module schimpy.triquadmesh) EdgeTypes (in module schimpy.trimesh) elem() (schimpy.triquadmesh.TriQuadMesh method) elem2node_values() (schimpy.schism_hotstart.VariableField method) element2edges() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) element_id (schimpy.schism_source.SchismSource property) elements_on_linestring() (schimpy.schism_setup.SchismSetup method) elems (schimpy.trimesh.TriMesh property) (schimpy.triquadmesh.TriQuadMesh property) elevation (schimpy.params.HydroOutput attribute) embed_raster() (in module schimpy.embed_raster) energy_input_atmos (schimpy.params.WindWaveOutput attribute)

ensure_offset() (in module schimpy.interpolate_structure) enum() (in module schimpy.trimesh) (in module schimpy.triquadmesh) eos_a (schimpy.params.Opt attribute) eos_b (schimpy.params.Opt attribute) eps1_tvd_imp (schimpy.params.Opt attribute) eps2_tvd_imp (schimpy.params.Opt attribute) epsilon1 (schimpy.params.Opt attribute) epsilon2 (schimpy.params.Opt attribute) epsilon3 (schimpy.params.Opt attribute) evaporation_rate (schimpy.params.HydroOutput attribute) example() (in module schimpy.lsc2) (in module schimpy.station) (in module schimpy.vgrid_opt2) example2() (in module schimpy.lsc2) example3() (in module schimpy.lsc2) extrude_casts() (schimpy.schism_hotstart.VariableField method)

F

failed_incomplete() (in module schimpy.combine_consume) FILE0 contour_smooth-view command line option sch-contour-smooth-cli-view command line option FILE1 contour_smooth-view command line option sch-contour-smooth-cli-view command line option file_to_elapsed() (in module schimpy.model_time) file_to_timestamp() (in module schimpy.model_time) filelist_main() (in module schimpy.stacked_dem_fill) files (schimpy.hrr3.AWSGrib2Inventory property) fill_2dm() (in module schimpy.stacked_dem_fill) fill_gr3() (in module schimpy.stacked_dem_fill) fill_land_and_island_boundaries() (schimpy.schism_mesh.SchismMesh method) fill_open_boundaries() (schimpy.schism_mesh.SchismMesh method) find_closest_elems() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) find_closest_nodes() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) find_edge() (schimpy.triquadmesh.TriQuadMesh method) find_elem() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method)

find_elem_with_tolerance() (schimpy.trimesh.TriMesh method) find_intersecting_elems_with_line() (schimpy.triquadmesh.TriQuadMesh method) find_neighbors_on_segment() (schimpy.triquadmesh.TriQuadMesh method) find_nodes_in_box() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) find_two_neighboring_node_paths() (schimpy.schism_mesh.SchismMesh method) FindMultiPoly() (in module schimpy.geo_tools) fix_depth() (in module schimpy.vgrid_opt2) flag_fib (schimpy.params.Opt attribute) flag_ic (schimpy.params.Opt attribute) flip_sigma() (in module schimpy.lsc2) flux_stations_from_yaml() (in module schimpy.station) fprime() (in module schimpy.grid_opt) frictional_velocity (schimpy.params.WindWaveOutput attribute) from_iof_array() (schimpy.params.OutControls method) fwvor_advxy_stokes (schimpy.params.Opt attribute) fwvor_advz_stokes (schimpy.params.Opt attribute) fwvor_breaking (schimpy.params.Opt attribute) fwvor_gradpress (schimpy.params.Opt attribute) fwvor_streaming (schimpy.params.Opt attribute) fwvor_wveg (schimpy.params.Opt attribute) fwvor_wveg_NL (schimpy.params.Opt attribute)

G

gather_ppf_names() (in module schimpy.combine_consume) gaussian_weights() (schimpy.nudging.Nudging static method) GaussianQuadrature (class in schimpy.gaussian_quadrature) GaussianQuadratureLine2 (class in schimpy.gaussian_quadrature) GaussianQuadratureQuad4 (class in schimpy.gaussian_quadrature) GaussianQuadratureTri3 (class in schimpy.gaussian_quadrature) gen_elev2D() (in module schimpy.gen_elev2d) gen_nudge_3dfield() (schimpy.nudging.Nudging method) gen_nudge_obs() (schimpy.nudging.Nudging method) gen_profile_plot() (in module schimpy.cruise) gen_region_weight() (schimpy.nudging.Nudging method) gen_sflux() (schimpy.hrr3.HRRR method) gen_sigma() (in module schimpy.lsc2) gen_station_xyt() (in module schimpy.cruise) gen_wsett (schimpy.params.Opt attribute) generate_3D_field() (schimpy.schism_hotstart.hotstart method) generate_metricsplots() (in module schimpy.batch_metrics) GenerateField() (schimpy.schism_hotstart.VariableField method) geometry2coords() (in module schimpy.geo_tools) geometry2coords_points() (in module schimpy.geo_tools) get_baro() (schimpy.param.Params method) get_centers_of_elements() (schimpy.schism_mesh.SchismMesh method) get_centers_of_sides() (schimpy.schism_mesh.SchismMesh method) get_closest_node_i_from_new_mesh() (schimpy.schism_setup.SchismSetup method) get_coordinates_3d() (schimpy.schism_mesh.SchismMesh method) get_dem_elevation() (schimpy.grid_opt.GridOptimizer method) get_edges_from_node() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method)

get_elems_i_from_node() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) get_grid() (schimpy.schism_hotstart.VariableField method) get_hotstart_data() (schimpy.schism_hotstart.hotstart method) get_hotstart_freq() (schimpy.param.Params method) get_index_bounds() (in module schimpy.profile_plot) get_interval() (schimpy.param.Params method) get_iof_array_names() (schimpy.params.OutControls method) get_key() (schimpy.schism_hotstart.VariableField class method) get_mesh() (schimpy.schism_hotstart.hotstart method) get_nc_out_freq() (schimpy.param.Params method) get_nc_stack() (schimpy.param.Params method) get_neighbor_nodes() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) get_nudging_comb() (schimpy.nudging.Nudging method) get_reader() (schimpy.schism_linestring.LineStringIoFactory method) (schimpy.schism_polygon.SchismPolygonIoFactory method) get_run_start() (schimpy.param.Params method) get_station_out_freq() (schimpy.param.Params method) get_tracer_names() (schimpy.params.TracerGenOutput method) get_type_dict() (in module schimpy.params) get_value() (schimpy.schism_hotstart.VariableField class method) get_value_dict() (in module schimpy.params) get_writer() (schimpy.schism_linestring.LineStringIoFactory method) (schimpy.schism_polygon.SchismPolygonIoFactory method) Gr3IO (class in schimpy.gr3) gradient_matrix() (in module schimpy.vgrid_opt2) grid_opt_with_args() (in module schimpy.grid_opt) GridOptimizer (class in schimpy.grid_opt)

H

h0 (schimpy.params.Opt attribute) h1_bcc (schimpy.params.Opt attribute) h1_pp (schimpy.params.Opt attribute) h2_bcc (schimpy.params.Opt attribute) h2_pp (schimpy.params.Opt attribute) h_bcc1 (schimpy.params.Opt attribute) h_massconsv (schimpy.params.Opt attribute) h_tvd (schimpy.params.Opt attribute) hess_base() (in module schimpy.vgrid_opt2) hmin_airsea_ex (schimpy.params.Opt attribute) hmin_man (schimpy.params.Opt attribute) hmin_radstress (schimpy.params.Opt attribute) hmin_salt_ex (schimpy.params.Opt attribute)

horizontal_side_vel_xy (schimpy.params.HydroOutput attribute) horizontal_vel_xy (schimpy.params.HydroOutput attribute) hotstart (class in schimpy.schism_hotstart) hotstart_freq (schimpy.param.Params property) hotstart_inventory() (in module schimpy.hotstart_inventory) hotstart_inventory2() (in module schimpy.hotstart_inventory) hotstart_nc() (schimpy.schism_hotstart.VariableField method) hotstart_to_outputnc() (in module schimpy.schism_hotstart) HRRR (class in schimpy.hrr3) hvis_coef0 (schimpy.params.Opt attribute) hw_depth (schimpy.params.Opt attribute) hw_ratio (schimpy.params.Opt attribute) HydroOutput (class in schimpy.params)

I

i_hmin_airsea_ex (schimpy.params.Opt attribute) i_hmin_salt_ex (schimpy.params.Opt attribute) i_prtnftl_weno (schimpy.params.Opt attribute) iadjust_mass_consv0 (schimpy.params.Opt attribute) ibc (schimpy.params.Core attribute) ibcc_mean (schimpy.params.Opt attribute) ibdef (schimpy.params.Opt attribute) ibtp (schimpy.params.Core attribute) ibtrack_test (schimpy.params.Opt attribute) ic_elev (schimpy.params.Opt attribute) ic_to_gpd() (in module schimpy.geo_tools) icou_elfe_wwm (schimpy.params.Opt attribute) ics (schimpy.params.Opt attribute) ielad_weno (schimpy.params.Opt attribute) ielm_transport (schimpy.params.Opt attribute) ieos_pres (schimpy.params.Opt attribute) ieos_type (schimpy.params.Opt attribute) if_source (schimpy.params.Opt attribute) iflux (schimpy.params.Opt attribute) iflux_out_format (schimpy.params.Opt attribute) iharind (schimpy.params.Opt attribute) ihconsv (schimpy.params.Opt attribute) ihdif (schimpy.params.Opt attribute) ihfskip (schimpy.params.Core attribute) ihhat (schimpy.params.Opt attribute) ihorcon (schimpy.params.Opt attribute) ihot (schimpy.params.Opt attribute) ihydraulics (schimpy.params.Opt attribute) iloadtide (schimpy.params.Opt attribute) imm (schimpy.params.Opt attribute) in_vertices() (schimpy.nudging.Nudging method) incr_grad() (in module schimpy.vgrid_opt2) index_interior() (in module schimpy.vgrid_opt2) indvel (schimpy.params.Opt attribute) init_logger() (in module schimpy.grid_opt) initialize_netcdf() (schimpy.schism_hotstart.hotstart method) initializer_options() (schimpy.schism_hotstart.VariableField method) input (schimpy.schism_setup.SchismSetup property) integrate() (schimpy.gaussian_quadrature.GaussianQuadrature method) integrate_over_edges() (schimpy.grid_opt.GridOptimizer method) integrate_over_elements() (schimpy.grid_opt.GridOptimizer method) inter_mom (schimpy.params.Opt attribute) interp() (schimpy.interp_2d.Invdisttree method) interp_from_mesh() (schimpy.schism_hotstart.VariableField method) interpolate_structure() (in module schimpy.interpolate_structure) interpolate_tide() (schimpy.schism_setup.SchismSetup method) intersects() (schimpy.schism_polygon.SchismPolygon method) inu_elev (schimpy.params.Opt attribute) inu_tr (schimpy.params.Opt attribute)

inu_uv (schimpy.params.Opt attribute) inunfl (schimpy.params.Opt attribute) inv_atm_bnd (schimpy.params.Opt attribute) Invdisttree (class in schimpy.interp_2d) inverse() (schimpy.three_point_linear_norm.ThreePointLinearNorm method) iof_age (schimpy.params.Schout attribute) iof_ana (schimpy.params.Schout attribute) iof_cos (schimpy.params.Schout attribute) iof_dvd (schimpy.params.Schout attribute) iof_eco (schimpy.params.Schout attribute) iof_fib (schimpy.params.Schout attribute) iof_gen (schimpy.params.Schout attribute) iof_hydro (schimpy.params.Schout attribute) iof_ice (schimpy.params.Schout attribute) iof_icm_ba (schimpy.params.Schout attribute) iof_icm_cbp (schimpy.params.Schout attribute) iof_icm_core (schimpy.params.Schout attribute) iof_icm_dbg (schimpy.params.Schout attribute) iof_icm_ph (schimpy.params.Schout attribute) iof_icm_sav (schimpy.params.Schout attribute) iof_icm_sed (schimpy.params.Schout attribute) iof_icm_silica (schimpy.params.Schout attribute) iof_icm_veg (schimpy.params.Schout attribute) iof_icm_zb (schimpy.params.Schout attribute) iof_marsh (schimpy.params.Schout attribute) iof_sed (schimpy.params.Schout attribute) iof_sed2d (schimpy.params.Schout attribute) iof_ugrid (schimpy.params.Schout attribute) iof_wwm (schimpy.params.Schout attribute) iout_sta (schimpy.params.Schout attribute) ip_weno (schimpy.params.Opt attribute) ipre (schimpy.params.Core attribute) ipre2 (schimpy.params.Opt attribute) iprecip_off_bnd (schimpy.params.Opt attribute) irouse_test (schimpy.params.Opt attribute) is_elem_on_boundary() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) isav (schimpy.params.Opt attribute) isconsv (schimpy.params.Opt attribute) ishapiro (schimpy.params.Opt attribute) itr_met (schimpy.params.Opt attribute) itransport_only (schimpy.params.Opt attribute) itur (schimpy.params.Opt attribute) iunder_deep (schimpy.params.Opt attribute) iupwind_mom (schimpy.params.Opt attribute) iwbl (schimpy.params.Opt attribute) iwind_form (schimpy.params.Opt attribute) iwindoff (schimpy.params.Opt attribute) izonal5 (schimpy.params.Opt attribute)

J

jacobian() (schimpy.gaussian_quadrature.GaussianQuadratureQuad4 method) (schimpy.gaussian_quadrature.GaussianQuadratureTri3 method)

jacobian_det() (schimpy.gaussian_quadrature.GaussianQuadrature method) (schimpy.gaussian_quadrature.GaussianQuadratureLine2 method) (schimpy.gaussian_quadrature.GaussianQuadratureTri3 method)

K

kr_co (schimpy.params.Opt attribute)

L

label_components() (in module schimpy.lsc2) laplace2() (in module schimpy.vgrid_opt2) laplace_smooth_data() (in module schimpy.laplace_smooth_data) laplace_smooth_data2() (in module schimpy.laplace_smooth_data) laplace_smooth_with_vel() (in module schimpy.laplace_smooth_data) laplace_smooth_with_vel2() (in module schimpy.laplace_smooth_data) laplace_smooth_with_vel3() (in module schimpy.laplace_smooth_data) latent_heat (schimpy.params.HydroOutput attribute) lev_tr_source (schimpy.params.Opt attribute) level_age (schimpy.params.Opt attribute) linecounter (schimpy.base_io.BaseIO property) LineString (class in schimpy.schism_linestring) LineStringIo (class in schimpy.schism_linestring)

LineStringIoFactory (class in schimpy.schism_linestring) LineStringShapefileReader (class in schimpy.schism_linestring) LineStringShapefileWriter (class in schimpy.schism_linestring) LineStringYamlReader (class in schimpy.schism_linestring) LineStringYamlWriter (class in schimpy.schism_linestring) ll2utm() (in module schimpy.geo_tools) load() (in module schimpy.schism_yaml) (schimpy.schism_setup.SchismSetup method) load_boundary() (in module schimpy.bctide) load_schism() (in module schimpy.schism_setup) loadtide_coef (schimpy.params.Opt attribute) localize_datetime() (in module schimpy.hrr3) longitudinal() (in module schimpy.cruise) lowest_layer_height() (in module schimpy.lsc2)

M

main() (in module schimpy.check_mesh_skewness) (in module schimpy.combine_consume) (in module schimpy.combine_flux) (in module schimpy.convert_points) (in module schimpy.convert_polygons) (in module schimpy.convert_sav_class_to_number) (in module schimpy.create_mesh_n_levels) (in module schimpy.create_vgrid_lsc2) (in module schimpy.cruise) (in module schimpy.download_hrrr) (in module schimpy.gen_elev2d) (in module schimpy.grid_opt) (in module schimpy.hotstart_inventory) (in module schimpy.interpolate_structure) (in module schimpy.merge_th) (in module schimpy.model_time) (in module schimpy.nudging) (in module schimpy.schism_hotstart) (in module schimpy.separate_species) (in module schimpy.small_areas) (in module schimpy.stacked_dem_fill) (in module schimpy.station) MAIN_INPUTFILE sch-batch-metrics-cli command line option map_to_3D() (schimpy.schism_hotstart.VariableField class method) map_to_dict() (in module schimpy.nml) map_to_object() (in module schimpy.nml) map_to_schism() (schimpy.schism_hotstart.hotstart method) mark_elem_deleted() (schimpy.triquadmesh.TriQuadMesh method) match_cruise() (in module schimpy.cruise) max_subcyc (schimpy.params.Opt attribute) mdc2 (schimpy.params.Core attribute) mean_dir_spreading (schimpy.params.WindWaveOutput attribute) mean_wave_direction (schimpy.params.WindWaveOutput attribute) mean_wave_length (schimpy.params.WindWaveOutput attribute) mean_wave_number (schimpy.params.WindWaveOutput attribute) mean_wave_period (schimpy.params.WindWaveOutput attribute) merc_to_latlon() (in module schimpy.cencoos_download) merge_station_subloc() (in module schimpy.station) merge_th() (in module schimpy.merge_th) merged_mesh() (schimpy.schism_mesh.SchismMesh method) mesh (schimpy.schism_input.SchismInput property) (schimpy.schism_setup.SchismSetup property) mesh_function_depths() (in module schimpy.lsc2) mesh_gpd (schimpy.nudging.Nudging property) mesh_opt() (in module schimpy.vgrid_opt2) meshessp() (in module schimpy.vgrid_opt2) meshgrad() (in module schimpy.vgrid_opt2) meshobj() (in module schimpy.vgrid_opt2) meth_sink (schimpy.params.Opt attribute) mid (schimpy.params.Opt attribute) mixing_length (schimpy.params.HydroOutput attribute) model_data_for_longitude() (in module schimpy.cruise) modified_latlon() (schimpy.hrr3.HRRR method) modify_depth() (schimpy.schism_setup.SchismSetup method) module schimpy.base_io schimpy.batch_metrics schimpy.bctide schimpy.bound_linear schimpy.cencoos_download schimpy.check_mesh_skewness schimpy.clip_dems schimpy.combine_consume schimpy.combine_flux schimpy.contour_smooth schimpy.convert_linestrings schimpy.convert_mesh schimpy.convert_points schimpy.convert_polygons schimpy.convert_sav_class_to_number schimpy.create_mesh_n_levels schimpy.create_vgrid_lsc2 schimpy.cruise schimpy.cut_mesh schimpy.download_hrrr schimpy.embed_raster schimpy.gaussian_quadrature schimpy.gen_elev2d schimpy.geo_tools schimpy.gr3 schimpy.grid_opt schimpy.hotstart_inventory schimpy.hrr3 schimpy.interp_2d schimpy.interpolate_structure schimpy.laplace_smooth_data schimpy.lsc2 schimpy.material_poly schimpy.merge_th schimpy.metricsplot schimpy.model_time schimpy.nml schimpy.nudging schimpy.param schimpy.params schimpy.plot_default_formats schimpy.prepare_schism schimpy.priority_queue schimpy.profile_plot schimpy.raster_to_nodes schimpy.read_output_xyt schimpy.schism_hotstart schimpy.schism_input schimpy.schism_linestring schimpy.schism_mesh schimpy.schism_polygon schimpy.schism_setup schimpy.schism_source schimpy.schism_sources_sinks schimpy.schism_structure schimpy.schism_vertical_mesh schimpy.schism_yaml schimpy.separate_species schimpy.simulation_timing schimpy.small_areas schimpy.sms2gr3 schimpy.split_quad schimpy.stacked_dem_fill schimpy.station schimpy.subset_schism_output schimpy.three_point_linear_norm schimpy.trimesh schimpy.triquadmesh schimpy.unit_conversions schimpy.vgrid_opt2 schimpy.write_ts

moitn0 (schimpy.params.Opt attribute) msc2 (schimpy.params.Core attribute) multi_file_to_elapsed() (in module schimpy.model_time) mxitn0 (schimpy.params.Opt attribute)

N

n_boundaries() (schimpy.schism_mesh.SchismMesh method) n_duplicate (schimpy.schism_structure.SchismStructure property) n_edges() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) n_elems() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) n_node_pairs() (schimpy.schism_structure.SchismStructure method) n_nodes() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) n_sinks() (schimpy.schism_input.SchismInput method) n_sources() (schimpy.schism_input.SchismInput method) n_structures() (schimpy.schism_input.SchismInput method) n_total_boundary_nodes() (schimpy.schism_mesh.SchismMesh method) n_vert_levels (schimpy.schism_mesh.SchismMesh property) nadv (schimpy.params.Opt attribute) name (schimpy.params.Core attribute) (schimpy.params.HydroOutput attribute) (schimpy.params.Opt attribute) (schimpy.params.OutControls attribute) (schimpy.params.Schout attribute) (schimpy.params.TracerGenOutput attribute) (schimpy.params.WindWaveOutput attribute) (schimpy.schism_polygon.SchismPolygon property) (schimpy.schism_structure.SchismStructure property) Namelist (class in schimpy.nml) nc_out (schimpy.params.Schout attribute) nc_out_freq (schimpy.param.Params property) nc_stack (schimpy.param.Params property) nchi (schimpy.params.Opt attribute) ncor (schimpy.params.Opt attribute)

nearest_cycle() (in module schimpy.hrr3) nearest_neighbor_fill() (in module schimpy.profile_plot) NetCDFTHWriter (class in schimpy.gen_elev2d) nhot (schimpy.params.Schout attribute) nhot_write (schimpy.params.Schout attribute) niter_shap (schimpy.params.Opt attribute) node() (schimpy.triquadmesh.TriQuadMesh method) node2elem_values() (schimpy.schism_hotstart.VariableField method) node2elems (schimpy.triquadmesh.TriQuadMesh property) node_pairs (schimpy.schism_structure.SchismStructure property) nodes (schimpy.trimesh.TriMesh property) (schimpy.triquadmesh.TriQuadMesh property) NodeType (in module schimpy.triquadmesh) note (schimpy.schism_source.SchismSource property) nquad (schimpy.params.Opt attribute) nramp_elev (schimpy.params.Opt attribute) nspool (schimpy.params.Core attribute) nspool_sta (schimpy.params.Schout attribute) nstep_ice (schimpy.params.Opt attribute) nstep_wwm (schimpy.params.Opt attribute) ntd_weno (schimpy.params.Opt attribute) ntracer_age (schimpy.params.Core attribute) ntracer_gen (schimpy.params.Core attribute) (schimpy.params.TracerGenOutput attribute) nu_sum_mult (schimpy.params.Opt attribute) Nudging (class in schimpy.nudging) nudging (schimpy.schism_input.SchismInput property) num() (in module schimpy.schism_hotstart) number_of_quadrature_points() (schimpy.gaussian_quadrature.GaussianQuadrature method) nws (schimpy.params.Opt attribute)

O

object_func() (in module schimpy.grid_opt) obs_points() (schimpy.schism_hotstart.VariableField method) Opt (class in schimpy.params) opt (schimpy.params.Params attribute)

optimize() (schimpy.grid_opt.GridOptimizer method) orbital_velocity (schimpy.params.WindWaveOutput attribute) organize_nudging() (schimpy.nudging.Nudging method) OutControls (class in schimpy.params) output_interval (schimpy.hrr3.AWSGrib2Inventory property)

P

param_from_template() (in module schimpy.param) Params (class in schimpy.param) (class in schimpy.params) parse() (in module schimpy.nml) ParseType() (in module schimpy.stacked_dem_fill) partition_check() (in module schimpy.geo_tools) partition_schout() (in module schimpy.subset_schism_output) partition_scribeio() (in module schimpy.subset_schism_output) patch_init() (schimpy.schism_hotstart.VariableField method) patch_initializer_options() (schimpy.schism_hotstart.VariableField method) peak_group_vel (schimpy.params.WindWaveOutput attribute) peak_n_factor (schimpy.params.WindWaveOutput attribute) peak_period (schimpy.params.WindWaveOutput attribute) peak_phase_vel (schimpy.params.WindWaveOutput attribute) peak_spreading (schimpy.params.WindWaveOutput attribute) peak_wave_length (schimpy.params.WindWaveOutput attribute) peak_wave_number (schimpy.params.WindWaveOutput attribute) plot() (schimpy.nudging.Nudging method) plot_comparison() (in module schimpy.metricsplot) plot_edges() (schimpy.schism_mesh.SchismMesh method) plot_elems() (schimpy.schism_mesh.SchismMesh method) plot_mesh() (in module schimpy.lsc2) plot_mesh_boundary() (schimpy.schism_mesh.SchismMesh method)

plot_metrics() (in module schimpy.metricsplot) plot_nodes() (schimpy.schism_mesh.SchismMesh method) plot_result() (in module schimpy.separate_species) plot_vgrid() (in module schimpy.create_vgrid_lsc2) Polylen() (in module schimpy.geo_tools) precipitation_rate (schimpy.params.HydroOutput attribute) prepare_schism() (in module schimpy.prepare_schism) priorityDictionary (class in schimpy.priority_queue) prmsl_ref (schimpy.params.Opt attribute) process_cruise() (in module schimpy.cruise) process_default() (schimpy.param.Params method) process_orphans() (in module schimpy.lsc2) process_orphans2() (in module schimpy.lsc2) process_stations() (in module schimpy.cruise) process_xyt() (in module schimpy.cruise) profile_plot() (in module schimpy.profile_plot) project_fun() (in module schimpy.geo_tools) project_mesh() (in module schimpy.schism_hotstart) prop (schimpy.schism_linestring.LineString property) (schimpy.schism_polygon.SchismPolygon property) properties (schimpy.schism_structure.SchismStructure property) prune_dated() (in module schimpy.model_time) prune_ppf_files() (in module schimpy.combine_consume)

Q

quadrature_vector() (schimpy.gaussian_quadrature.GaussianQuadrature method)

R

raster_to_nodes() (in module schimpy.raster_to_nodes) RasterWrapper (class in schimpy.contour_smooth) read() (schimpy.gr3.Gr3IO method) (schimpy.schism_linestring.LineStringIo method) (schimpy.schism_linestring.LineStringShapefileReader method) (schimpy.schism_linestring.LineStringYamlReader method) (schimpy.schism_polygon.SchismPolygonDictConverter method) (schimpy.schism_polygon.SchismPolygonIo method) (schimpy.schism_polygon.SchismPolygonShapefileReader method) (schimpy.schism_polygon.SchismPolygonYamlReader method) (schimpy.schism_source.SchismSourceIO method) (schimpy.schism_structure.SchismStructureIO method) read_data() (in module schimpy.merge_th) (schimpy.nudging.Nudging method) read_density_tiff() (in module schimpy.convert_sav_class_to_number) read_depth_avg_from_output7b_xyt() (in module schimpy.read_output_xyt) read_flux_out() (in module schimpy.station) read_hotstart() (in module schimpy.schism_hotstart) read_keyfile() (in module schimpy.material_poly) read_lines() (in module schimpy.cut_mesh) read_lines_from_shapefile() (in module schimpy.cut_mesh) read_linestrings() (in module schimpy.schism_linestring) read_locations_from_input() (in module schimpy.merge_th) read_mesh() (in module schimpy.schism_mesh) read_obs_links() (in module schimpy.station) read_param_nml() (in module schimpy.schism_hotstart) read_params() (in module schimpy.param) read_points() (in module schimpy.convert_points) read_pointstrings() (in module schimpy.station) read_polygons() (in module schimpy.schism_polygon) read_source_sink_csv() (in module schimpy.schism_sources_sinks) read_source_sink_in() (in module schimpy.schism_sources_sinks) read_source_sink_th() (in module schimpy.schism_sources_sinks) read_source_sink_yaml() (in module schimpy.schism_sources_sinks)

read_sources() (in module schimpy.schism_source) read_staout() (in module schimpy.station) read_station_dbase() (in module schimpy.station) read_station_in() (in module schimpy.station) read_station_out() (in module schimpy.station) read_station_shp() (in module schimpy.station) read_station_subloc() (in module schimpy.station) read_th_spec() (in module schimpy.merge_th) read_vmesh() (in module schimpy.schism_vertical_mesh) read_yaml() (schimpy.nudging.Nudging method) (schimpy.schism_hotstart.hotstart method) rearth_eq (schimpy.params.Opt attribute) rearth_pole (schimpy.params.Opt attribute) records() (in module schimpy.subset_schism_output) reference (schimpy.schism_structure.SchismStructure property) reference_pair (schimpy.schism_structure.SchismStructure property) registered_readers (schimpy.schism_linestring.LineStringIoFactory attribute) (schimpy.schism_polygon.SchismPolygonIoFactory attribute) registered_writers (schimpy.schism_linestring.LineStringIoFactory attribute) (schimpy.schism_polygon.SchismPolygonIoFactory attribute) renumber() (schimpy.triquadmesh.TriQuadMesh method) reorder_open_boundaries() (schimpy.schism_setup.SchismSetup method) reorder_variables() (schimpy.nudging.Nudging static method) rho0 (schimpy.params.Opt attribute) rinflation_icm (schimpy.params.Opt attribute) rlatitude (schimpy.params.Opt attribute) rmaxvel (schimpy.params.Opt attribute) rms_orbital_velocity (schimpy.params.WindWaveOutput attribute) rnday (schimpy.params.Core attribute) roller_diss_rate (schimpy.params.WindWaveOutput attribute) roughness_length (schimpy.params.WindWaveOutput attribute) rtol0 (schimpy.params.Opt attribute) run_example() (in module schimpy.separate_species) run_start (schimpy.param.Params property)

S

s1_mxnbt (schimpy.params.Opt attribute) s2_mxnbt (schimpy.params.Opt attribute) s3 (schimpy.hrr3.AWSGrib2Inventory property) salinity (schimpy.params.HydroOutput attribute) salinity_at_element (schimpy.params.HydroOutput attribute) save_smooth() (in module schimpy.contour_smooth) scaled() (schimpy.three_point_linear_norm.ThreePointLinearNorm method) sch command line option --help -h sch-batch-metrics-cli command line option --help -h MAIN_INPUTFILE sch-clip-dems-cli command line option --coords --help --hshift --image --outformat --prefix --verbose -h DEMLIST sch-contour-smooth-cli command line option --help -h sch-contour-smooth-cli-save command line option --dumpfile --help --original --outfile -h sch-contour-smooth-cli-smooth command line option --help --input --max_time --nstep --report_interval --scales -h sch-contour-smooth-cli-view command line option --help --levels --vmax --vmin -h FILE0 FILE1 sch-convert-linestrings-cli command line option --help --input --output -h sch-convert-mesh-cli command line option --crs --help --input --output -h sch-convert-points-cli command line option --help, [1] --input --output -h, [1] sch-convert-polygons-cli command line option --help, [1] --input --output -h, [1] schimpy.base_io module schimpy.batch_metrics module schimpy.bctide module schimpy.bound_linear module schimpy.cencoos_download module schimpy.check_mesh_skewness module schimpy.clip_dems module schimpy.combine_consume module schimpy.combine_flux module schimpy.contour_smooth module schimpy.convert_linestrings module schimpy.convert_mesh module schimpy.convert_points module schimpy.convert_polygons module schimpy.convert_sav_class_to_number module schimpy.create_mesh_n_levels module schimpy.create_vgrid_lsc2 module schimpy.cruise module schimpy.cut_mesh module schimpy.download_hrrr module schimpy.embed_raster module schimpy.gaussian_quadrature module schimpy.gen_elev2d module schimpy.geo_tools module schimpy.gr3 module schimpy.grid_opt module schimpy.hotstart_inventory module schimpy.hrr3 module schimpy.interp_2d module schimpy.interpolate_structure module schimpy.laplace_smooth_data module schimpy.lsc2 module schimpy.material_poly module schimpy.merge_th module schimpy.metricsplot module schimpy.model_time module schimpy.nml module schimpy.nudging module schimpy.param module schimpy.params module schimpy.plot_default_formats module

schimpy.prepare_schism module schimpy.priority_queue module schimpy.profile_plot module schimpy.raster_to_nodes module schimpy.read_output_xyt module schimpy.schism_hotstart module schimpy.schism_input module schimpy.schism_linestring module schimpy.schism_mesh module schimpy.schism_polygon module schimpy.schism_setup module schimpy.schism_source module schimpy.schism_sources_sinks module schimpy.schism_structure module schimpy.schism_vertical_mesh module schimpy.schism_yaml module schimpy.separate_species module schimpy.simulation_timing module schimpy.small_areas module schimpy.sms2gr3 module schimpy.split_quad module schimpy.stacked_dem_fill module schimpy.station module schimpy.subset_schism_output module schimpy.three_point_linear_norm module schimpy.trimesh module schimpy.triquadmesh module schimpy.unit_conversions module schimpy.vgrid_opt2 module schimpy.write_ts module schism_timing() (in module schimpy.simulation_timing) SCHISMHotstart (class in schimpy.schism_hotstart) SchismInput (class in schimpy.schism_input) SchismMesh (class in schimpy.schism_mesh) SchismPolygon (class in schimpy.schism_polygon) SchismPolygonDictConverter (class in schimpy.schism_polygon) SchismPolygonIo (class in schimpy.schism_polygon) SchismPolygonIoFactory (class in schimpy.schism_polygon) SchismPolygonShapefileReader (class in schimpy.schism_polygon) SchismPolygonShapefileWriter (class in schimpy.schism_polygon) SchismPolygonYamlReader (class in schimpy.schism_polygon) SchismPolygonYamlWriter (class in schimpy.schism_polygon) SchismSetup (class in schimpy.schism_setup) SchismSource (class in schimpy.schism_source) SchismSourceIO (class in schimpy.schism_source) SchismStructure (class in schimpy.schism_structure) SchismStructureIO (class in schimpy.schism_structure) Schout (class in schimpy.params) schout (schimpy.params.Params attribute) schout_nc() (schimpy.schism_hotstart.VariableField method) searchfor() (schimpy.param.Params method) sections() (schimpy.param.Params method) sed_class (schimpy.params.Core attribute) select_solver() (schimpy.grid_opt.GridOptimizer method) sensible_heat (schimpy.params.HydroOutput attribute) separate_species() (in module schimpy.separate_species) set_color_cycle_dark2() (in module schimpy.plot_default_formats) set_dual_axes() (in module schimpy.plot_default_formats) set_dual_axes_elev() (in module schimpy.plot_default_formats) set_dual_axes_salt() (in module schimpy.plot_default_formats) set_elem() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) set_hotstart_freq() (schimpy.param.Params method) set_index_bounds() (in module schimpy.profile_plot) set_interval() (schimpy.param.Params method) set_nc_out_freq() (schimpy.param.Params method) set_nc_stack() (schimpy.param.Params method) set_node() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) set_run_start() (schimpy.param.Params method) set_station_out_freq() (schimpy.param.Params method) setdefault() (schimpy.priority_queue.priorityDictionary method) setup() (in module schimpy.combine_consume) sfea0 (schimpy.params.Opt attribute) shape() (schimpy.gaussian_quadrature.GaussianQuadrature method) (schimpy.gaussian_quadrature.GaussianQuadratureLine2 method) (schimpy.gaussian_quadrature.GaussianQuadratureQuad4 method) (schimpy.gaussian_quadrature.GaussianQuadratureTri3 method) shape_derivative() (schimpy.gaussian_quadrature.GaussianQuadrature method) (schimpy.gaussian_quadrature.GaussianQuadratureLine2 method) (schimpy.gaussian_quadrature.GaussianQuadratureQuad4 method) (schimpy.gaussian_quadrature.GaussianQuadratureTri3 method) shapely_to_geopandas() (in module schimpy.geo_tools) shapiro0 (schimpy.params.Opt attribute) shorewafo (schimpy.params.Opt attribute) shortest_path() (schimpy.trimesh.TriMesh method) (schimpy.triquadmesh.TriQuadMesh method) show_parameters() (schimpy.grid_opt.GridOptimizer method) show_registered_readers() (schimpy.schism_polygon.SchismPolygonIoFactory method) shp2yaml() (in module schimpy.geo_tools) shw (schimpy.params.Opt attribute) sig_wave_height (schimpy.params.WindWaveOutput attribute) sigma_z() (in module schimpy.lsc2) signa() (schimpy.nudging.Nudging static method) simple_trend() (schimpy.schism_hotstart.VariableField method) slam0 (schimpy.params.Opt attribute) slr_rate (schimpy.params.Opt attribute) small_areas() (in module schimpy.small_areas) small_elad (schimpy.params.Opt attribute) smallest() (schimpy.priority_queue.priorityDictionary method) smooth_bed() (in module schimpy.lsc2) smooth_heights() (in module schimpy.vgrid_opt2) solar_radiation (schimpy.params.HydroOutput attribute) sources (schimpy.schism_input.SchismInput property) specific_humidity (schimpy.params.HydroOutput attribute) split() (in module schimpy.combine_consume) split_all_quads() (in module schimpy.split_quad) stab (schimpy.params.Opt attribute) stacked_dem_fill() (in module schimpy.stacked_dem_fill) staout_name() (in module schimpy.station) start_day (schimpy.params.Opt attribute) start_hour (schimpy.params.Opt attribute) start_month (schimpy.params.Opt attribute) start_year (schimpy.params.Opt attribute) station_names_from_file() (in module schimpy.station) station_out_freq (schimpy.param.Params property) station_subset() (in module schimpy.station) station_subset_multidir() (in module schimpy.station) step_nu_tr (schimpy.params.Opt attribute) structures (schimpy.schism_input.SchismInput property) subset_schism_output() (in module schimpy.subset_schism_output) subset_schism_scribeIO_output() (in module schimpy.subset_schism_output) szcoord() (in module schimpy.lsc2)

T

targeth2inv() (in module schimpy.vgrid_opt2) tdmin_pp1 (schimpy.params.Opt attribute) tdmin_pp2 (schimpy.params.Opt attribute) temperature (schimpy.params.HydroOutput attribute) temperature_at_element (schimpy.params.HydroOutput attribute) test_combine_flux() (in module schimpy.combine_flux) test_date_label_correct() (in module schimpy.interpolate_structure) test_gradients() (in module schimpy.vgrid_opt2) test_main() (in module schimpy.stacked_dem_fill) test_param() (in module schimpy.param) test_template_times() (in module schimpy.interpolate_structure) test_vgrid_spacing() (in module schimpy.vgrid_opt2) text_init() (schimpy.schism_hotstart.VariableField method) thetai (schimpy.params.Opt attribute) ThreePointLinearNorm (class in schimpy.three_point_linear_norm) THWriter (class in schimpy.gen_elev2d) time_block_report() (in module schimpy.cencoos_download) time_start (schimpy.schism_input.SchismInput property) tm_10 (schimpy.params.WindWaveOutput attribute) tmpdir (schimpy.hrr3.AWSGrib2Inventory property) to_dataframe() (schimpy.param.Params method)

to_datetime() (in module schimpy.model_time) to_elapsed() (in module schimpy.model_time) to_geopandas() (schimpy.schism_mesh.SchismMesh method) to_iof_array() (schimpy.params.OutControls method) TopLevelNamelist (class in schimpy.nml) total_heat (schimpy.params.HydroOutput attribute) touch() (in module schimpy.combine_consume) TracerGenOutput (class in schimpy.params) trim_elems() (schimpy.triquadmesh.TriQuadMesh method) trim_to_left() (schimpy.trimesh.TriMesh method) trim_to_left_of_mesh() (schimpy.schism_mesh.SchismMesh method) (schimpy.schism_setup.SchismSetup method) TriMesh (class in schimpy.trimesh) TriQuadMesh (class in schimpy.triquadmesh) triweight() (in module schimpy.vgrid_opt2) turbinj (schimpy.params.Opt attribute) turbinjds (schimpy.params.Opt attribute) turbulent_kinetic_ener (schimpy.params.HydroOutput attribute) type (schimpy.schism_polygon.SchismPolygon property) (schimpy.schism_source.SchismSource property) (schimpy.schism_structure.SchismStructure property)

U

u() (in module schimpy.station) u_resell_number (schimpy.params.WindWaveOutput attribute) unsorted_unique() (in module schimpy.schism_sources_sinks) update() (schimpy.param.Params method)

upward_longwave (schimpy.params.HydroOutput attribute) Usage() (in module schimpy.stacked_dem_fill) use_timeseries (schimpy.schism_structure.SchismStructure property) utc_start (schimpy.params.Opt attribute) utm2ll() (in module schimpy.geo_tools)

V

validate() (schimpy.param.Params method) values_at_quadrature_points() (schimpy.gaussian_quadrature.GaussianQuadrature method) var_centering() (schimpy.schism_hotstart.VariableField method) VariableField (class in schimpy.schism_hotstart) vclose_surf_frac (schimpy.params.Opt attribute) vdmax_pp1 (schimpy.params.Opt attribute) vdmax_pp2 (schimpy.params.Opt attribute) vdmin_pp1 (schimpy.params.Opt attribute) vdmin_pp2 (schimpy.params.Opt attribute) velmin_btrack (schimpy.params.Opt attribute)

vertical_fill() (in module schimpy.profile_plot) vertical_vel_at_element (schimpy.params.HydroOutput attribute) vertical_velocity (schimpy.params.HydroOutput attribute) vgrid_gen() (in module schimpy.create_vgrid_lsc2) view_smooth() (in module schimpy.contour_smooth) viscosity (schimpy.params.HydroOutput attribute) vmesh (schimpy.schism_mesh.SchismMesh property) vnf1 (schimpy.params.Opt attribute) vnf2 (schimpy.params.Opt attribute) vnh1 (schimpy.params.Opt attribute) vnh2 (schimpy.params.Opt attribute)

W

wafo_obcramp (schimpy.params.Opt attribute) water_density (schimpy.params.HydroOutput attribute) wave_energy_dir_x (schimpy.params.WindWaveOutput attribute) wave_energy_dir_y (schimpy.params.WindWaveOutput attribute) weights() (schimpy.interp_2d.Invdisttree method) wet_dry_check() (schimpy.schism_hotstart.hotstart method) wind_speed_xy (schimpy.params.HydroOutput attribute) wind_stress_xy (schimpy.params.HydroOutput attribute) WindWaveOutput (class in schimpy.params) write() (in module schimpy.nml) (schimpy.gr3.Gr3IO method) (schimpy.param.Params method) (schimpy.schism_linestring.LineStringIo method) (schimpy.schism_linestring.LineStringShapefileWriter method) (schimpy.schism_linestring.LineStringYamlWriter method) (schimpy.schism_polygon.SchismPolygonShapefileWriter method) (schimpy.schism_polygon.SchismPolygonYamlWriter method) (schimpy.schism_source.SchismSourceIO method) (schimpy.schism_structure.SchismStructureIO method) write_all() (schimpy.gen_elev2d.BinaryTHWriter method) (schimpy.gen_elev2d.NetCDFTHWriter method) (schimpy.gen_elev2d.THWriter method) write_copy() (schimpy.contour_smooth.RasterWrapper method)

write_global_local_maps() (in module schimpy.subset_schism_output) write_hgrid() (schimpy.schism_setup.SchismSetup method) write_hgrid_ll() (schimpy.schism_setup.SchismSetup method) write_linestrings() (in module schimpy.schism_linestring) write_mesh() (in module schimpy.schism_mesh) write_points() (in module schimpy.convert_points) write_pointstrings() (in module schimpy.station) write_polygons() (in module schimpy.schism_polygon) write_prop() (in module schimpy.check_mesh_skewness) write_source_sink_csv() (in module schimpy.schism_sources_sinks) write_source_sink_in() (in module schimpy.schism_sources_sinks) write_source_sink_yaml() (in module schimpy.schism_sources_sinks) write_station_in() (in module schimpy.station) write_station_shp() (in module schimpy.station) write_step() (schimpy.gen_elev2d.BinaryTHWriter method) (schimpy.gen_elev2d.NetCDFTHWriter method) (schimpy.gen_elev2d.THWriter method) write_structures() (schimpy.schism_setup.SchismSetup method) write_th() (in module schimpy.merge_th) (in module schimpy.separate_species) write_to_log() (in module schimpy.nudging) write_ts() (in module schimpy.write_ts) wtiminc (schimpy.params.Opt attribute)

X

xlsc0 (schimpy.params.Opt attribute)

Y

yaml2csv() (in module schimpy.schism_sources_sinks) yaml2df() (in module schimpy.schism_sources_sinks)

yaml2shp() (in module schimpy.geo_tools) YamlAction (class in schimpy.schism_yaml)

Z

z (schimpy.nudging.Nudging property) (schimpy.schism_mesh.SchismMesh property)

z_coordinates (schimpy.params.HydroOutput attribute) z_sigma() (in module schimpy.lsc2) zero_downcross_period (schimpy.params.WindWaveOutput attribute)